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0.6.1.1

Getting started

  • Introduction
  • Installation
  • Conventions used in spam
  • How to Contribute

Scripts

  • Scripts in spam

Tutorials

  • Gallery of Tutorials

Examples

  • Gallery of Examples
    • Digital Image Correlation examples
      • Image correlation basics
      • Displace images with a linear and homogeneous deformation function
      • Multimodal registration
    • Image operations
      • Compute distance field
      • Histogram Normalisation
      • Geodesic reconstruction
      • Morphological operations
    • Kalisphera sphere generation
      • Kalisphera sphere assembly generation
      • Kalisphera virtual concrete generation for multimodal registration
    • LabelToolkit examples
      • Labelled image toolkit advanced examples
      • Fix segmentation issues
      • Labelled image toolkit simple examples
    • Mesh
      • Project a scalar field onto an unstructured mesh
      • Read and write structured meshes
    • OrientationsToolkit examples
      • Orientations toolkit examples
    • Random fields and excursion sets
      • Simulation of correlated Random Fields
      • Compute covariance
      • Expectation of global descriptors in 1D
      • Generation of synthetic morphologies based on excursion sets
      • Expectation of global descriptors in 3D

Some notes

  • Stitching overlapping volumes
  • Using VTK files in Paraview

Reference documentation

  • Indices and tables

Repository

  • Source Code
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  • Gallery of Examples
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Gallery of Examples¶

Digital Image Correlation examples¶

This is a set of examples for the use of the basic image transformation and image correlation functions

Image correlation basics

Image correlation basics¶

Displace images with a linear and homogeneous deformation function

Displace images with a linear and homogeneous deformation function¶

Multimodal registration

Multimodal registration¶

Image operations¶

This is a set of examples for filters and operations on 3D images.

Compute distance field

Compute distance field¶

Histogram Normalisation

Histogram Normalisation¶

Geodesic reconstruction

Geodesic reconstruction¶

Morphological operations

Morphological operations¶

Kalisphera sphere generation¶

Set of examples of voxelised spheres generation from DEM data

Kalisphera sphere assembly generation

Kalisphera sphere assembly generation¶

Kalisphera virtual concrete generation for multimodal registration

Kalisphera virtual concrete generation for multimodal registration¶

LabelToolkit examples¶

This is a set of examples for LabelToolkit

Labelled image toolkit advanced examples

Labelled image toolkit advanced examples¶

Fix segmentation issues

Fix segmentation issues¶

Labelled image toolkit simple examples

Labelled image toolkit simple examples¶

Mesh¶

This is a set of examples for structured and unstructured mesh manipulation

Project a scalar field onto an unstructured mesh

Project a scalar field onto an unstructured mesh¶

Read and write structured meshes

Read and write structured meshes¶

OrientationsToolkit examples¶

This is a set of examples for OrientationsToolkit

Orientations toolkit examples

Orientations toolkit examples¶

Random fields and excursion sets¶

This is a set of examples for generating correlated random fields working with their excursions.

Simulation of correlated Random Fields

Simulation of correlated Random Fields¶

Compute covariance

Compute covariance¶

Expectation of global descriptors in 1D

Expectation of global descriptors in 1D¶

Generation of synthetic morphologies based on excursion sets

Generation of synthetic morphologies based on excursion sets¶

Expectation of global descriptors in 3D

Expectation of global descriptors in 3D¶

Download all examples in Python source code: spam_examples_python.zip

Download all examples in Jupyter notebooks: spam_examples_jupyter.zip

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